All the R scripts for publication_children

Table 1 (sample characteristics).

number of total cases In each strata, total number should be equal to = 51964

## [1] 51964

Sex

## 
##     F     M 
## 19996 31968

## 
##    F    M 
## 38.5 61.5

Missing Value in Sex

## [1] 0

Age

## 
##   0-4  5-11 12-17   17+ 
##  1146  1505  2025 47288

## 
##   0-4  5-11 12-17   17+ 
##   2.2   2.9   3.9  91.0

Missing Value in Age

## [1] 0

Clinical outcome

## 
##     ALIVE      DEAD RECOVERED   UNKNOWN 
##     49283      1110       909         8

Missing Value in Clinical outcome I have counted ‘8’ values with UNKNOWN status in NAs.

## [1] 662

## [1] 1.3

ALIVE, DEAD, RECOVERED (%)

## 
##     ALIVE      DEAD RECOVERED   UNKNOWN 
##      94.8       2.1       1.7       0.0

Country wise

## 
##          Botswana      Burkina_faso              Chad             Congo 
##              1896              1007               909              9381 
##          Eswatini            Guinea           Liberia         Mauritius 
##              4595             10198              1293               209 
##        Mozambique           Namibia             Niger            Rwanda 
##              3995              7485              1081              4035 
## Sao_tome_principe      Sierra_leone            Uganda 
##               882              2028              2970

## 
##          Botswana      Burkina_faso              Chad             Congo 
##               3.6               1.9               1.7              18.1 
##          Eswatini            Guinea           Liberia         Mauritius 
##               8.8              19.6               2.5               0.4 
##        Mozambique           Namibia             Niger            Rwanda 
##               7.7              14.4               2.1               7.8 
## Sao_tome_principe      Sierra_leone            Uganda 
##               1.7               3.9               5.7

Table 2.

country	age groups	confirmed_cases_each_group	confirmed_deaths_each_group
Botswana	0-4	26	0
Botswana	5-11	56	0
Botswana	12-17	79	0
Botswana	17+	1735	0
Burkina_faso	0-4	23	0
Burkina_faso	5-11	14	0
Burkina_faso	12-17	29	0
Burkina_faso	17+	941	39
Chad	0-4	5	0
Chad	5-11	1	0
Chad	12-17	13	0
Chad	17+	890	93
Congo	0-4	78	4
Congo	5-11	163	2
Congo	12-17	246	7
Congo	17+	8894	376
Eswatini	0-4	119	0
Eswatini	5-11	206	0
Eswatini	12-17	208	1
Eswatini	17+	4062	88
Guinea	0-4	352	0
Guinea	5-11	311	1
Guinea	12-17	445	0
Guinea	17+	9090	66
Liberia	0-4	26	0
Liberia	5-11	47	0
Liberia	12-17	91	1
Liberia	17+	1129	75
Mauritius	0-4	3	0
Mauritius	5-11	4	0
Mauritius	12-17	8	0
Mauritius	17+	194	2
Mozambique	0-4	193	2
Mozambique	5-11	189	1
Mozambique	12-17	196	2
Mozambique	17+	3417	22
Namibia	0-4	149	0
Namibia	5-11	218	0
Namibia	12-17	259	0
Namibia	17+	6859	23
Niger	0-4	4	1
Niger	5-11	26	0
Niger	12-17	43	0
Niger	17+	1008	74
Rwanda	0-4	61	0
Rwanda	5-11	107	0
Rwanda	12-17	170	0
Rwanda	17+	3697	20
Sao_tome_principe	0-4	18	0
Sao_tome_principe	5-11	38	0
Sao_tome_principe	12-17	42	2
Sao_tome_principe	17+	784	13
Sierra_leone	0-4	72	2
Sierra_leone	5-11	93	0
Sierra_leone	12-17	123	1
Sierra_leone	17+	1740	156
Uganda	0-4	17	0
Uganda	5-11	32	0
Uganda	12-17	73	0
Uganda	17+	2848	36

Figure 1. Trends in 15 countries next to each other

Figure 1.

## [1] "Botswana"
## [1] "Botswana"
## [1] "1"
## [1] "Botswana"

## [1] "Burkina_Faso"
## [1] "Burkina_Faso"
## [1] "1"
## [1] "Burkina_Faso"

## [1] "Chad"
## [1] "Chad"
## [1] "2"
## [1] "Chad"

## [1] "Congo"
## [1] "Congo"
## [1] "1"
## [1] "Congo"

## [1] "Eswatini"
## [1] "Eswatini"
## [1] "1"
## [1] "Eswatini"

## [1] "Guinea"
## [1] "Guinea"
## [1] "2"
## [1] "Guinea"

## [1] "Liberia"
## [1] "Liberia"
## [1] "1"
## [1] "Liberia"

## [1] "Mauritius"
## [1] "Mauritius"
## [1] "2"
## [1] "Mauritius"

## [1] "Mozambique"
## [1] "Mozambique"
## [1] "2"
## [1] "Mozambique"

## [1] "Namibia"
## [1] "Namibia"
## [1] "1"
## [1] "Namibia"

## [1] "Niger"
## [1] "Niger"
## [1] "1"
## [1] "Niger"

## [1] "Rwanda"
## [1] "Rwanda"
## [1] "2"
## [1] "Rwanda"

## [1] "Sao_tome_principe"
## [1] "Sao_tome_principe"
## [1] "1"
## [1] "Sao_tome_principe"

## [1] "Sierra_leone"
## [1] "Sierra_leone"
## [1] "2"
## [1] "Sierra_leone"

## [1] "Uganda"
## [1] "Uganda"
## [1] "1"
## [1] "Uganda"

Children vs adults (combining data from all the 15 countries)

Figure 3.

## [1] "Botswana"
## [1] "Botswana"
## [1] "1"
## [1] "Botswana"
## [1] "Burkina_Faso"
## [1] "Burkina_Faso"
## [1] "1"
## [1] "Burkina_Faso"
## [1] "Chad"
## [1] "Chad"
## [1] "2"
## [1] "Chad"
## [1] "Congo"
## [1] "Congo"
## [1] "1"
## [1] "Congo"
## [1] "Eswatini"
## [1] "Eswatini"
## [1] "1"
## [1] "Eswatini"
## [1] "Guinea"
## [1] "Guinea"
## [1] "2"
## [1] "Guinea"
## [1] "Liberia"
## [1] "Liberia"
## [1] "1"
## [1] "Liberia"
## [1] "Mauritius"
## [1] "Mauritius"
## [1] "2"
## [1] "Mauritius"
## [1] "Mozambique"
## [1] "Mozambique"
## [1] "2"
## [1] "Mozambique"
## [1] "Namibia"
## [1] "Namibia"
## [1] "1"
## [1] "Namibia"
## [1] "Niger"
## [1] "Niger"
## [1] "1"
## [1] "Niger"
## [1] "Rwanda"
## [1] "Rwanda"
## [1] "2"
## [1] "Rwanda"
## [1] "Sao_tome_principe"
## [1] "Sao_tome_principe"
## [1] "1"
## [1] "Sao_tome_principe"
## [1] "Sierra_leone"
## [1] "Sierra_leone"
## [1] "2"
## [1] "Sierra_leone"
## [1] "Uganda"
## [1] "Uganda"
## [1] "1"
## [1] "Uganda"